FastQCFastQC Report
Wed 31 May 2023
EGAF00007925274

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925274
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481927
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG16430.3409230028614292No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9080.1884102779051599No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8900.1846752723960268No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6340.13155519404391122No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC6230.12927269067721875No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5420.11246516588611968No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTGGT5150.10686265762241999No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGGTG5050.10478765456179047No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT4870.10105264905265735No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)