FastQCFastQC Report
Sun 21 May 2023
EGAF00007925281

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925281
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469097
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC23760.5065050511941027No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC23140.4932881685450983No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT22000.468986158513058No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA15440.329143013065528No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG12120.2583687382353756No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9320.19867959078825914No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7790.16606373521894194No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC7620.16243975126679558No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6950.14815699098480697No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGT6620.14112219860711112No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6220.13259517754323732No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5960.12705261385171937No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5550.11831241726124875No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTC5530.11788606620805504No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGAC5520.11767289068145821No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5470.116607013048474No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5410.11532795988889293No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTG5340.113835731202715No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA4950.10552188566543806No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG4920.10488235908564753No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT4740.10104519960690433No Hit

[OK]Adapter Content

Adapter graph