FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925282

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925282
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469097
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT50531.0771759358938557No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC29730.633770840572419No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT29110.6205539579234145No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG12260.26135319560773146No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9500.20251675026700236No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9430.20102452158082446No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC8800.18759446340522323No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7660.16329245337318293No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA7350.15668401204868077No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7070.15071509730396912No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7020.1496492196709849No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6670.14218807624009533No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGGGC5970.1272657893783162No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGCTG5920.126199911745332No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGAAC5910.12598673621873516No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5690.12129687463360457No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA5690.12129687463360457No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCACC5450.1161806619952803No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC5430.1157543109420866No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATCAC5280.11255667804313393No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5280.11255667804313393No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT4920.10488235908564753No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4920.10488235908564753No Hit

[OK]Adapter Content

Adapter graph