FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444045
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG10990.2474974383226925No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9150.20606019660169578No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8820.19862851737999526No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7400.16664977648661736No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6810.15336283484781948No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6810.15336283484781948No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6490.14615635802677657No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6460.14548075082480377No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5050.11372721233208347No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5050.11372721233208347No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5000.1126012003287955No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA4990.1123759979281379No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)