FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925290

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925290
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444045
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22400.5044533774730038No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT15990.36009863865148806No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT13730.30920289610287244No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9140.20583499420103818No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8710.19615129097276177No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7650.17227983650305714No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7380.16619937168530216No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC7130.16056931166886237No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6780.15268722764584672No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6660.1499847988379556No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5230.1177808555439201No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5180.11665484354063213No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5120.1153036291366866No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4960.11170039072616514No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT4600.10359310430249186No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)