FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925291

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925291
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458256
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11640.2540064941866555No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9840.21472713941552318No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9110.1987971788694529No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7660.16715547641492964No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7460.16279110366258162No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7440.1623546663873468No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7050.15384413952026815No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6760.14751579902936351No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5470.11936559477671868No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5270.11500122202437064No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5020.1095457560839356No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT4890.1067089137949094No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)