FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925293

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925293
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447440
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG10850.24249061326658325No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9440.21097800822456642No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8510.19019309851600216No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7860.17566601108528518No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6970.15577507598784193No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6890.15398712676559986No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6790.15175219023779724No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6580.14705882352941177No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5770.12895583765421062No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5290.11822814232075808No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA4930.11018237082066869No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4910.10973538351510817No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)