FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447440
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21890.48922760593599135No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT15990.3573663507956374No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT14860.3321115680314679No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9010.2013677811550152No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8780.1962274271410692No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT8170.18259431432147327No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7150.15979796173788663No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT7140.15957446808510636No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6950.15532808868228143No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6910.15443411407116037No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6090.13610763454317895No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5050.11286429465403183No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC4940.11040586447344895No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4800.1072769533345253No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT4720.10548900411228321No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)