FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925295

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925295
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473156
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT11500.24304880419988334No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9440.19951136623016513No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7100.15005621824514537No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6370.13462790284810927No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6310.1333598221305447No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5770.1219470956724632No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5640.11919958745107322No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5590.11814285351976939No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5300.1120137967182071No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5290.11180244993194634No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC5270.1113797563594248No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5050.1067301270616879No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT4800.1014464574051687No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG4790.10123511061890793No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)