FastQCFastQC Report
Wed 31 May 2023
EGAF00007925296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473156
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT13260.28024583858177854No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11830.2500232481464887No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT10230.21620776234476577No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA7610.16083490434444453No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7350.15533988790166456No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7290.15407180718409996No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7010.14815409716879846No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6210.13124635426793702No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5690.12025632138237706No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5650.11941093423733398No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5600.11835420030603015No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5550.11729746637472631No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5250.11095706278690326No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5240.11074571600064248No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5230.11053436921438173No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG4950.10461665919908021No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA4940.10440531241281946No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)