FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925298

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925298
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473156
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT13070.2762302496428239No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG12440.26291540210839554No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT10220.21599641555850504No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA8310.17562917938269829No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8310.17562917938269829No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7260.15343776682531765No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7220.1525923796802746No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6620.1399115725046285No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6050.12786480568776473No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5960.1259626846114178No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5910.12490595068011395No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5880.12427191032133166No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5380.11370457100829325No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA4980.10525069955786254No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC4890.1033485784815156No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC4870.10292588490899408No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)