FastQCFastQC Report
Sun 21 May 2023
EGAF00007925299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460840
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10120.21959899314295633No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9010.19551254231403525No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7310.15862338338685877No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6400.13887683360819372No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6170.13388594740039927No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5670.12303619477475912No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5650.12260220466973352No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5450.11826230361947747No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5420.11761131846193906No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG5120.11110146688655498No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4930.10697856088881175No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC4830.10480861036368372No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC4740.10285565489106849No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA4660.10111969447096605No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)