FastQCFastQC Report
Wed 31 May 2023
EGAF00007925300

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925300
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460840
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22040.4782570957382172No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12890.27970662268900265No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10240.22220293377310996No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT10170.22068396840552035No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7620.16535023001475566No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7200.15623643780921795No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA7020.15233052686398751No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7010.15211353181147472No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6180.13410294245291207No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6070.13171599687527125No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5730.12433816508983594No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA5330.11565836298932383No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5240.11370540751670863No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5060.10979949657147817No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5050.10958250151896537No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC4940.10719555594132454No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)