FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455661
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG21430.47030577556560693No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT18870.41412365771922544No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA18780.4121485051386886No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT18230.4000781282576301No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG16780.3682562255712032No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT16270.35706369428149437No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT14470.31756064267075745No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT13350.29298096611296554No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13230.29034742933891644No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT12440.2730099789097597No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC9120.2001487948277338No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT8940.19619848966666006No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT7940.17425234988291735No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG6990.15340351708836172No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT6600.14484452257270206No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6560.14396667698135238No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATAT6330.13891906483109154No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG5760.12640976515435817No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT5700.1250929967673336No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGC5630.12355676698247162No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTAT5450.11960646182139793No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAG5340.11719238644518622No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5240.11499777246681195No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5030.11038908311222598No Hit
ACGCACCAGACCCTGTTTCAGCACCTGGTCAATGCGCTCCT4880.10709716214466457No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG4750.10424416397277801No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)