FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925303

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925303
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455563
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG21620.4745776105609982No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT19020.41750537247318154No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA18980.4166273380410613No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT18980.4166273380410613No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG17810.39094483090154375No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT15900.3490186867678016No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT13950.30621450820193913No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13550.29743416388073657No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT12980.28492217322302293No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT12330.2706541137010688No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT9510.20875268623659077No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC9240.20282595381977903No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT7670.16836310235905902No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATAT7170.15738767195755582No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG6820.14970487067650357No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6450.1415830521793912No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG6400.1404855091392409No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT6290.1380709144509102No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT6190.13587582837060955No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGC5790.127095484049407No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAG5370.11787612251214431No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5080.11151037287927246No Hit
ACGCACCAGACCCTGTTTCAGCACCTGGTCAATGCGCTCCT5010.10997381262306202No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTAT4780.10492511463837055No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT4740.1040470802062503No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG4640.10185199412594964No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGG4620.10141297690988951No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGG4610.10119346830185945No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)