FastQCFastQC Report
Sun 21 May 2023
EGAF00007925304

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925304
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455563
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG47361.0395927676303827No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT33100.7265734925795115No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT20230.44406591404481927No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC19820.43506606111558666No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG16360.35911608273718454No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC14470.31762895581950246No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT14020.3077510684581496No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC13770.302263353257398No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13670.3000682671770974No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA12000.2634103296360767No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT10360.2274109179191462No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC8340.1830701790970733No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC7200.158046197781646No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTACC7150.1569486547414957No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC7130.15650963752543556No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6720.14750978459620295No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA6460.1418025607874213No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTCGT5860.12863204430561745No Hit
TCCTACACCAACGGCAAACTGACTATCACCCCG5400.1185346483362345No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5370.11787612251214431No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5350.11743710529608418No Hit
GAAGCAACTATCAAAAAAGAACAGAAGCTGATC5090.11172988148730252No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5070.11129086427124239No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC4910.10777872654276137No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTGTG4780.10492511463837055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)