FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443159
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG20630.4655214042815332No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA18290.4127186856184801No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT17980.4057234536588448No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT17940.40482084308340793No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG17100.385866020999235No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT15430.34818202947474836No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT13840.31230325910113527No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13820.31185195381341685No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT12920.29154321586608867No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT11650.2628853300959701No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT9040.2039899900487184No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC8670.19564084222592792No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT7870.1775886307171918No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG6640.14983335552250998No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT6530.14735117644005877No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6450.14554595528918515No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATAT6190.1396789865488459No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT6060.1367455021786763No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG5820.13132983872605544No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGC5530.12478591205413857No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAG5260.11869329066994012No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTAT5220.11779068009450332No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG5030.1135032798611785No Hit
ACGCACCAGACCCTGTTTCAGCACCTGGTCAATGCGCTCCT4980.11237501664188249No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC4800.10831326905241685No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA4520.1019949950243592No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTT4510.1017693423805No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)