FastQCFastQC Report
Sun 21 May 2023
EGAF00007925306

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925306
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443159
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG45581.0285247507102417No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT31510.7110314808003448No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20200.4558183405955876No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT18910.4267091495377505No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC18460.4165547805640865No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG15530.3504385559133404No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC14140.3190728384169113No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT13920.3141084802520089No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13630.30756455358009205No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC12720.28703016298890466No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA11030.24889486617669956No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT9950.2245243806399058No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC8010.18074776773122062No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC6990.15773119805758204No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC6880.15524901897513083No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6550.14780248172777716No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA6300.1421611656312971No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTACC6110.1378737653979723No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5730.12929896493132262No Hit
TCCTACACCAACGGCAAACTGACTATCACCCCG5340.12049851182081375No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTCGT5230.11801633273836254No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTGTG5190.11711372216292573No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5100.11508284836819291No Hit
GAAGCAACTATCAAAAAAGAACAGAAGCTGATC4960.11192371135416408No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTTTC4830.10899022698399446No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC4480.10109238444892239No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC4440.10018977387348559No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)