FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497268
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC15140.30446358905057236No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC15120.30406139144284366No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG15010.3018493046003362No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT13100.26343943306225215No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA12470.2507702084188003No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT12410.24956361559561446No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT11220.225632857935761No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT10920.21959989381983158No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT9550.19204935769042047No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA9200.18501089955516944No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8530.17153727969626037No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7720.15524827658325088No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7250.1457966328016281No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7090.14257905193979906No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6880.13835597705864844No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6620.13312740815817628No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC5500.11060434212537304No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG5290.10638126724422242No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5180.10416918040171497No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)