FastQCFastQC Report
Sun 21 May 2023
EGAF00007925312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497268
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT32610.65578319940153No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23820.47901735080479746No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT21330.4289437486425831No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC17210.34609104145048547No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT16910.340058077334556No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC12740.2561998761231368No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA11970.24071526822558462No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11580.2328724148748763No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT11400.22925263640531865No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC9580.1926526541020134No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9120.18340210912425492No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA8520.17133618089239605No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7590.1526339921330148No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7480.15042190529050734No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6780.1363449890200053No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG6550.13171971653112607No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5750.1156318122219809No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC5090.10235929116693614No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG5010.10075050073602163No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)