FastQCFastQC Report
Sun 21 May 2023
EGAF00007925313

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925313
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501775
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG15040.2997359374221514No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC14980.29854018235264806No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC14380.2865826316576155No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT12860.25629016989686615No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA12650.2521050271536047No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT11970.23855313636590106No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT11380.22679487818245228No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT10940.2180260076727617No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA9180.1829505256339993No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT8980.17896467540232175No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8380.16700712470728912No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7780.1550495740122565No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7670.15285735638483383No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7530.15006726122265956No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7010.13970405062029795No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6870.13691395545812365No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC5250.10462856858153556No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT5030.10024413332669026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)