FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925315

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925315
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences557540
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT25310.4539584603795243No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC23840.4275926390931592No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17760.31854216737812535No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17710.31764537073573196No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12730.22832442515335222No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11440.20518707177960327No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9060.1624995516016788No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7330.13147038777486816No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7120.12770384187681602No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6610.11855651612440363No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6320.11335509559852208No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5850.10492520716002439No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5840.10474584783154571No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)