FastQCFastQC Report
Sun 21 May 2023
EGAF00007925316

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925316
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences557540
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA53820.9653119058722244No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28070.5034616350396384No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA26390.47332926785522117No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA23000.41252645550095063No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17710.31764537073573196No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9590.17200559601104853No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8210.1472540086809915No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7860.14097643218423792No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7840.14061771352728056No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7130.1278832012052947No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6780.12160562470854108No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6340.11371381425547944No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5790.10384905118915236No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5780.10366969186067368No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5730.1027728952182803No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5670.10169673924740827No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5590.10026186461957885No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)