FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925317

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925317
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences568518
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT26230.4613750136319343No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC23930.42091895067526447No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18890.332267404022388No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18460.32470387920874977No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12510.22004580329910398No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11710.20597412922721886No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9520.16745292145543325No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7850.138078301830373No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7550.13280142405341608No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7520.1322737362757204No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6720.11820206220383522No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA6240.10975905776070415No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6040.10624113924273286No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5880.10342680442835582No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)