FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences568518
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA55580.9776295561442206No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA26320.4629580769650214No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA23460.4126518421580319No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19620.34510780661298324No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18700.3289253814303153No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9900.17413696663957867No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8990.15813043738280935No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7940.1396613651634601No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7930.13948546923756153No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7740.1361434466454888No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6930.12189587664770508No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6570.11556362331535677No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6290.11063853739019695No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6280.1104626414642984No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6240.10975905776070415No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6130.10782420257581996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)