FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925320

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925320
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541523
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG76171.406588455153336No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA51940.9591467029101257No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA24910.4599989289466929No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22230.4105088795859086No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17740.3275945804702663No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8880.16398195459841966No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7880.14551551826976877No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7740.14293021718375767No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7140.13185035538656714No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7090.1309270335701346No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7070.13055770484356158No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6110.11282992596805676No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5940.1096906317921861No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5770.10655133761631545No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5620.10378137216701783No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5610.10359670780373131No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5550.10248872162401228No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)