FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925324

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925324
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences588477
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38100.647433969381981No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32020.5441164225619693No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31670.5381688664127909No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20840.3541344861396452No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18340.31165194221694303No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14600.2480980565085806No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12570.21360223084334645No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG11300.19202109853061378No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10410.1768973128941318No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10050.1707798265692627No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9310.15820499356814285No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8830.15004834513498402No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8460.1437609286344241No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7600.12914693352501458No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6900.11725182122665798No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6570.11164412542886129No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)