FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925326

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925326
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547607
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG91501.6709063251565448No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36620.6687277554888816No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29650.5414466944359733No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19460.355364339754605No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16570.3025892656594967No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14050.25657086195026724No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11320.2067175912652687No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10260.18736064367329125No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG10200.18626496739450008No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9410.1718385630570829No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8300.15156855189944615No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8210.14992503748125938No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7370.1345855695781829No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6370.1163242982649966No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6160.1124894312892275No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6150.11230681857609563No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)