FastQCFastQC Report
Wed 31 May 2023
EGAF00007925330

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925330
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546078
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA28840.5281296811078271No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28620.5241009526111655No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20330.37229113789605145No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13180.24135746175454786No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11620.21279011423276528No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11440.20949388182640574No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT7750.14192111749603536No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5890.10786004929698688No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5810.10639505711638264No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)