FastQCFastQC Report
Wed 31 May 2023
EGAF00007925334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515443
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG77051.494830660228192No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33960.6588507361628735No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18420.3573625017703218No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18320.35542242304192706No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG15090.29275788011477505No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14300.27743125816045616No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9860.1912917626197271No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9290.18023331386787675No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9020.17499510130121082No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9020.17499510130121082No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8880.17227899108145808No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6410.12435904649010657No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6230.12086690477899593No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5580.10825639304442974No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5210.101078101749369No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)