FastQCFastQC Report
Wed 31 May 2023
EGAF00007925338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences559717
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20230.3614326525726394No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13270.2370840978565954No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10550.18848811095607243No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG7840.14007078577209553No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACC6690.11952468836930093No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA6230.11130624940818307No Hit
CCGACCAAGTCTCACTTCGCCAACCTGAAGG5820.10398111902979541No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)