FastQCFastQC Report
Wed 31 May 2023
EGAF00007925344

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925344
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502935
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG84711.6843130822074424No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31390.6241363198027579No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24320.48356149403004367No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17110.3402030083410381No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG16660.331255530038673No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12290.2443655740801495No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11670.23203793730800204No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG10550.20976865797767108No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9920.19724218835435992No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9860.19604919124737788No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9750.1938620298845775No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9530.1894877071589768No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9260.18411922017755772No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8530.1696044220426099No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8090.16085577659140843No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7810.15528845675882572No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7670.15250479684253432No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7450.1481304741169336No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7410.14733514271227893No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7180.14276198713551452No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6860.13639933589827713No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6760.1344110073866404No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6450.12824718900056667No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG6140.12208337061449294No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5820.1157207193772555No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5810.11552188652609184No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5670.11273822660980047No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5310.10558024396790837No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5270.10478491256325369No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5200.10339308260510802No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5140.102200085498126No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5140.102200085498126No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)