FastQCFastQC Report
Sun 21 May 2023
EGAF00007925378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504982
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA24190.4790269752189187No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG18610.36852798713617513No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12560.24872173661635463No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12250.24258290394509113No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11610.22990918488183737No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10910.2160473046564036No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10430.2065420153589633No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6800.13465826504707099No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6510.12891548609653414No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6480.1283214055154441No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6120.12119243854236389No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6050.11980625051982051No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5800.11485557901073702No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5450.10792463889802012No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)