FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469302
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16820.35840460939863883No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10140.2160655611951366No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9060.19305266118618714No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7470.15917255839523375No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7280.1551239926529186No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6430.1370119880162454No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT5590.11911306578706249No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5330.11357292319231539No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5220.1112290167099224No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)