FastQCFastQC Report
Wed 31 May 2023
EGAF00007925380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469302
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26700.5689300279990284No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17210.36671482329075944No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12820.2731716464025297No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9430.20093671026332724No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8090.17238366765963067No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7940.16918743154727658No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6610.1408474713510703No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5810.1238008787518485No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG5760.12273546671439713No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5740.12230930189941658No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5260.1120813463398835No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4900.10441037967023367No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4760.10142722596536984No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)