FastQCFastQC Report
Wed 31 May 2023
EGAF00007925381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472330
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17500.3705036732792751No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10450.22124362204390996No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9490.2009188491097326No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7760.16429191455126713No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7280.15412952808417843No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6220.13168759130269092No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT5450.1153854296784028No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5330.11284483306163065No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4870.10310587936400398No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)