FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925382

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925382
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472330
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27160.5750217009294349No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17710.37494971735862637No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12910.2733258526877395No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9840.20832892257531813No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8380.17741833040459No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7940.16810280947642536No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6540.13846251561408338No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5820.12321893591345034No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG5460.11559714606313382No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5360.11347998221582369No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4930.10437617767239007No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4840.10247073020981094No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4740.10035356636250078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)