FastQCFastQC Report
Sun 21 May 2023
EGAF00007925383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437890
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15360.3507730251889744No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9260.21146863367512392No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8450.19297083742492405No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7290.1664801662517984No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6280.1434150129027838No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5400.1233186416679988No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4790.10938820251661377No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT4640.10596268469250268No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4560.10413574185297678No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)