FastQCFastQC Report
Wed 31 May 2023
EGAF00007925384

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925384
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437890
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59571.3603873118819796No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15500.3539701751581447No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11680.26673365457078263No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8840.20187718376761288No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7610.17378793760990202No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6880.15711708419922812No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5520.12605905592728767No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5240.11966475598894699No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5100.11646760601977665No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG4640.10596268469250268No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4570.10436410970791751No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4500.10276553472333234No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4450.10162369544862865No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)