FastQCFastQC Report
Sun 21 May 2023
EGAF00007925386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405982
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24250.5973171224339996No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10020.24680897182633713No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8210.2022257144405417No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5510.13572030287057063No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG4340.10690129119024983No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4100.10098969905069682No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)