FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925405

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925405
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390239
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7530.19295867404334266No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6360.16297704739915794No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6170.1581082362347177No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5630.14427056239894015No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5180.13273916753579218No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4840.12402655808363593No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4430.11352017609721222No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4230.1083951117135909No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)