FastQCFastQC Report
Wed 31 May 2023
EGAF00007925406

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925406
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390239
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55001.4093927054958626No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14180.3633670647987515No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7560.19372743370088585No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6370.16323330061833902No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5720.14657684137156973No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5330.13658296582350815No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4930.12633283705626552No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4820.1235140516452738No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4740.12146402589182526No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4510.11557020185066075No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG3990.10224503445324531No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG3910.1001950086997968No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)