FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422851
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25630.6061236700398013No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15660.37034321782377244No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8230.1946312057911652No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7240.1712187035149497No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6300.14898865084864407No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6260.1480426911607162No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5020.11871794083495132No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5000.11824496099098736No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4960.11729900130305947No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4910.11611655169314959No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4680.11067728348756417No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)