FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482335
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28330.5873511148890294No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12380.25666808338602837No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10900.22598401525910414No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8680.1799579130687178No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7820.16212798158955913No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5600.11610187939917278No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5380.11154073413706242No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG5200.10780888801351757No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)