FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925416

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925416
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485774
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29010.5971912864830147No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12240.2519690226319235No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11050.22747203432048646No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9250.1904177662863801No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8030.1653032068410413No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5330.10972180478988171No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5220.10745737729890854No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG5200.10704566320964069No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)