FastQCFastQC Report
Wed 31 May 2023
EGAF00007925420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463606
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27620.5957645069304539No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13500.2911955410413153No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8200.17687432863250258No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8030.17320742181938972No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7080.152715883746112No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7030.15163738174225527No Hit
GCCCTGATGCAGGCATACGGCGGCGGTGGTT6800.14667627252451437No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6540.14106806210445938No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6430.1386953576959746No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC4980.10741879958412963No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4690.10116348796176064No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)