FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465662
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12730.2733742499924838No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8250.17716712980659793No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC8030.1724426730117553No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7400.15891354673561509No Hit
CCACAGATCGTCGAAGATGTCGTTGCGACGACGGCAATCACGCG6730.14452542831495807No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6580.1413042077730199No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6230.13378802650849758No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT5340.11467545129299793No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5030.10801826217299243No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)