FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925424

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925424
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465662
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28170.6049452177759834No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12920.2774544626789388No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8310.17845561802337317No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8060.17308691712014296No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7680.16492649174723298No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6570.14108945973689072No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6500.13958622348398622No Hit
GCCCTGATGCAGGCATACGGCGGCGGTGGTT6450.1385124833033402No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6220.13357327847236836No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5680.12197688452139105No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5480.11768192379880686No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5030.10801826217299243No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4680.10050208090847008No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)