FastQCFastQC Report
Wed 31 May 2023
EGAF00007925425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472786
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22040.4661728562182468No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18110.3830485674279695No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT14900.3151531559733156No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14440.3054235954533341No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13330.2819457428942481No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8770.18549618643530055No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8350.17661267465618694No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7910.16730613850663936No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7270.153769358652752No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT7220.15271179772666704No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6810.14403979813277043No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6550.13854048131712868No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6510.1376944325762607No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6300.13325267668670393No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6010.12711882331541122No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5710.12077345775890148No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5460.11548565312847674No Hit
CGCGGAGCTAGACGCAGTTGCAGCCTGGCTGGTGGTTTTAGTGG5300.11210145816500489No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG4790.10131433671893837No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)