FastQCFastQC Report
Sun 21 May 2023
EGAF00007925427

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925427
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439912
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19400.44099729036716434No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17340.394169743039517No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT13700.31142592154794596No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12070.27437305642946774No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11970.2720998745203586No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8130.1848096892105694No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8010.18208187091963846No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7860.17867209805597484No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7060.16048664278310207No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6350.1443470512284275No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT6270.14252850570114023No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6220.1413919147465857No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6140.13957336921929842No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5970.13570895997381294No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5880.13366309625561476No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5040.11456836821909835No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4980.1132044590736329No Hit
CGCGGAGCTAGACGCAGTTGCAGCCTGGCTGGTGGTTTTAGTGG4780.10865809525541473No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG4680.10638491334630563No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4540.10320245867355289No Hit

[OK]Adapter Content

Adapter graph